PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G238800.1
Common NameB456_009G238800, LOC105769573
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 348aa    MW: 38260.5 Da    PI: 6.3124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G238800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20160209255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Gorai.009G238800.1 160 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 209
                         59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-33159219No hitNo description
SuperFamilySSF541712.81E-23160218IPR016177DNA-binding domain
SMARTSM003801.4E-37160223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-32160218IPR001471AP2/ERF domain
PROSITE profilePS5103223.169160217IPR001471AP2/ERF domain
PRINTSPR003673.3E-11161172IPR001471AP2/ERF domain
PfamPF008472.3E-14161209IPR001471AP2/ERF domain
PRINTSPR003673.3E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAAAMDFISS GVDQSDLYGG ELMEVLEPFM KSVSSSSPSP SPSPSPSSLP STSYLSFSSS  60
ETQPNFYPDS CCYPYPTQMD SLSCPQQPQT GSTIGLNSLT QAQIHQIQLQ FHLHNNQPSY  120
LYQSSQPNTI SANSNPMVSF LSPKPVPMKH VGAPSKPTKL YRGVRQRHWG KWVAEIRLPR  180
NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPNLR HHGSHVGDYK PLPSSVDAKL  240
QAICESLEQN PKQGSKKKSS KVTADTKSRS NNKSDMAEPK PEENTAKVEN SSSLSTVQSE  300
SEGSAVSSPL SDLTFSDFDE QPWPEVVSSS ETFMLSKYPS EIDWDSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22159217160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6197180.0AY619718.1 Gossypium hirsutum transcription factor DRE-binding factor 2 (DBP2) mRNA, complete cds.
GenBankDQ0939640.0DQ093964.1 Gossypium hirsutum dehydration responsive element-binding protein 2 (DBP2) gene, complete cds.
GenBankKP7801980.0KP780198.1 Gossypium hirsutum C-repeat binding factor 15 (CBF15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445740.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E45e-93RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0D2QM830.0A0A0D2QM83_G
STRINGPOPTR_0005s16690.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-68related to AP2 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]